LAST UPDATE: 31/08/08

 
Poster Session A - Sept 14

 GENOMICS

GE-01

Detecting evidences of inter-chromosomal trans-spliced genes using a bioinformatic approach

Roberto Hirochi Herai

GE-03

Protein Kinases of the parasite Schistosoma mansoni

Luiza Andrade

GE-05

Computational analysis of the Schistosoma mansoni genome for the identification of vaccine candidates

Rômulo Moraes

GE-07

Evolutionary history of exon-shuffling

Gustavo França

GE-09

A study on the distribution of phylogenetically conserved blocks within clusters of mammalian homeobox genes

Nikola Stojanovic

GE-11

Null models in log-odds of profile-based models

Ariane Machado-Lima

GE-13

Two Intracellular 3-hydroxybutyrate-Oligomer Hydrolases and Possibly four Poly(3-hydroxybutyrate) depolymerases (PhaZd) Genes are involved in the Mobilization System in Burkholderia sacchari

Nuri Andrea Merchan Castellanos

GE-15

Prediction non-coding RNA in comparative analyze approach in Apis mellifera and Nasonia vitripennis

Alexandre Rossi Paschoal

GE-17

Identification of Putative Sugarcane Promoter Homologues in Sorghum

Flávio Vicente

GE-19

Immunogenic regions on the N protein from hantavirus genus: implications in vaccine development

Maurício Rigo

GE-21

Computational prediction and characterization of the bir multigene family of Plasmodium berghei

Luciana Márcia Oliveira

GE-23

Comparative genomic analysis of Vibrio cholerae biotypes El Tor N16961 and Classical O395 and identification of putative horizontally transferred genes from different genera to these strains

Fábio Mota

GE-25

Comparative Genomic Analyses in Sequenced Shewanella Genus

Amanda Lys Silva

GE-27

Using Scientific Workflows to detect distant homologies on protozoan metabolic pathways

Rafael Cuadrat

GE-29

Actin-Interacting and Flagellar Proteins in Leishmania spp.: Bioinformatics Predictions to Functional Assignments in Phagosome Formation

Angela Pinheiro

GE-31

GIAnT: Genomic Island Analyser Tool

Luiz Rangel

GE-33

The chitin synthases of basidiomycotan fungi

Marcel Diniz

GE-35

Understanding BLAST scores with different PSSM matrices

Izabella Pena

 STRUCTURE

ST-01

QM theoretical study by MC-RSO of the homologous toxins sequences of Crotalus sp., peptide C and myotoxin A

Antônio Fernandes

ST-03

Protein family Structural Classification Based on Intra-chain Contacts

Raquel Melo-Minardi

ST-05

Orangines: understanding proteins through sphere packing simulations

Douglas Pires

ST-07

Evaluation of point mutation in genes related to ketogluconic acid production by Gluconacetobacter diazotrophicus

Paula Kuser-Falcão

ST-09

Tipification of Avian Infectious Bronchitis Virus (AIBV) Isolates By S1 Segment Sequencing and Protein Modelling

Josiane Abreu

ST-11

Prediction of Binding Hot Spot Residues by using structural and evolutionary parameters

Roberto Higa

ST-13

Evaluation of ligand-binding affinity using polynomial empirical scoring functions

Raquel Dias

ST-15

Analyses of nucleases modeling structures and the heterologous expression of the Serratia marcenses nuclease in Saccharomyces cerevisiae

Ana Raquel Monteiro

ST-17

In silico evaluation of structural relations between 2S albumins and antimicrobial activity

Rodrigo Honorato

ST-19

Comparative modeling of proteins involved in Vibrio cholerae Pi-starvation response

Daniel Leite

ST-21

Algorithm to Predict Alpha-helices in Secondary Structure of Protein's Families

Alexandre Melo

ST-23

Constrained Docking of scorpion ß-toxin Ts3 with a model of domain II of Nav1.2 channel

Rodrigo Véras

ST-25

Analysis of Protein-Protein contacts in Subtilase complexes using NEQUIM Contact System (NCS)

Valdete Almeida

ST-27

Molecular dynamics studies of enoyl reductase from Plasmodium falciparum 3d7

Fernando Zanchi

ST-29

Studies of nitrogenase's conformational protection mechanism in Azotobacter vinelandii and Gluconacetobacter diazotrophicus using molecular modeling techniques

Mainá Bitar

ST-31

Comparative Modeling of cistein protease of Theobroma cacoa

Deise Andrade

ST-33

Computational Prediction and Biologics Characterizations of Neutralizing Epitope of Mutalysin II, an endopeptidase from bushmaster Lachesis muta muta snake venom

Melina Moraes

ST-35

Utilization from Biological and Physico-Chemical Parameters Using Bioinformatic Tool (STING) to the Developing from Stables Standards of Hemoglobins to Be Used in the Haemoglobinopathies Diagnosis

Ricardo Andrez

ST-37

Application of Virtual Screening for Discovery of New Inhibitors of Human Purine Nucleoside Phosphorylase

Ana Luiza Vivan

ST-39

Determination in silico of the Hsp65 protein tertiary structure and the its mRNA secondary structure to improved Hsp65DNA vaccine

Renata Rossetti

 FUNCTIONAL GENOMICS 

FG-01

Identification and characterisation of disordered proteins in Schsitossoma mansoni

Raul Torrieri

FG-03

Computational identification and characterization of elements associated with structural order and disorder in Leishmania braziliensis predicted proteome

Patrícia Ruy

FG-05

A new approach to cluster genes with similar patterns expression in time-course microarray experiments

Fabiano Belém

FG-07

The influence of SNPs in alternative polyadenylation

Suzana Ezquina

FG-09

D-MaPs - DNA-Microarray Projects

Taís Herig

FG-11

Expression profile of genes associated to innate immunity in sugarcane during the interaction with Gluconacetobacter diazotrophicus

Leandro Mattos

FG-13

Transcription Factor Affinity Analysis on Lymphoid Development

Ivan Costa

 SYSTEMS BIOLOGY 

SY-01

A Comprehensive Search of Human Genes Involved in Apoptosis

Marialva Sinigaglia

SY-03

Considerations on Using CoD for Inference of Gene Regulation Networks

Carlos Higa

SY-05

A Complex Network Approach can reveal phylogenetic relationships of extant organisms

Aristóteles Góes-Neto

SY-07

Deterministic and stochastic simulation of the trp operon of Escherichia coli

Itamar de Oliveira

SY-09

A log-likelihood score to infer condition-specific subnetworks from small samples of gene expression data

Monica Campiteli

 DATABASES 

DB-01

HTRIdb: an open-access database for experimentally verified human transcriptional regulation interactions

Marcio Luis Acencio

DB-03

Virtual Integration of Biological Databases Through Web Services

Sabrina Silveira

DB-05

DIVERGENOMA Database: a bioinformatics tool for population genetics and genetic epidemiology studies

Wagner Magalhães

DB-09

An automated clustering method to classify microarray date.

Milton Faria Jr.

DB-11

The Genome Comparison Project and the Protein World Database

Thomas Dan Otto

DB-13

A straightforward multiallelic significance test for the Hardy-Weinberg equilibrium law

Marcelo Lauretto

DB-15

Clustering samples of gene expression data by means of logical expressions evolved by genetic programming

Ismael Santana

DB-16

UniRef Enrichment of the Kegg Orthology databases - a solution for the database completeness

Gabriel Fernandes

DB-17

polymorp.pl: A tool to aid in the identification of potential polymorphisms in cDNA sequences

Wagner Arbex

 

Poster Session B - Sept 15

GENOMICS

GE-02

Identification of noncoding RNAs in neuropsychiatric disorders and brain aging

Ariane Machado-Lima

GE-04

Porcine Circovirus 2 Isolates: a phylogenetic approach

Pedro Marcus Pereira Vidigal

GE-06

Sequence and structural analysis of the 5' noncoding region of hepatitis C virus in patients with chronic infection

Fávio Araújo

GE-08

An algorithm to identify the evolutionary convergence of amino acid residues between two homologous sequences

Leandro Freitas

GE-10

Issues in imputation of genotypes in genome-wide association studies

Márcio Augusto Afonso de Almeida

GE-12

Analysis of the Simple Sequence Repeats in the Expressed Sequence Tags of the Trypanosoma vivax

Silvana Sant'Anna de Souza

GE-14

Paupfriendly friendly application integrated for phylogenetic analysis

Murilo Maciel

GE-16

Functional Diversity of Fatty Acid Oxidation Proteins in Gammaproteobacteria

Laila Nahum

GE-18

Design of degenerate primers for the identification of microsatellites in anatto (Bixa orellana l.)

Juliana Ribeiro

GE-20

WISARD (Web Interface for SAGE Analysis and Reports)

Gustavo Pires

GE-22

On the effect of homopolymer-related pyrosequencing errors on gene finding

Gustavo Costa

GE-24

Somatic mutations in splicing regulators elements and its association with alternative splicing

Júlia da Cunha

GE-26

Establishment of cross-species hybridization of human and mouse transcriptomes on a platform of cDNA microarray

Mariana Maschietto

GE-28

Quantitative analysis of genomic islands in Bacteria

Patrícia Rocha

GE-30

Identification of possible eukaryotic initiation factors of trypanosomatids using bioninformatics tools

Eduardo Nunes

GE-32

Use of SNP database to develop rules for designing a synthetic p53 coding sequence that resists to mutation

Luiza Quadros

GE-34

Metagenomic data survey using PSSM and MetaGene algorithm

Rafael Guedes

GE-36

Efficient recovery of synthetic orthologs and paralogs with seed linkage software

Lucas Santana-Santos

 STRUCTURE

ST-02

Using Linear Algebra for Protein Structural Comparison and Classification

Janaína Gomide

ST-04

Search for Structural Patterns in RNAs Using Graphs

Ariane Machado-Lima

ST-06

Evaluation of AlkB protein-substrate interactions for selection of n-alkane through 3-D homology modelling

Bruno Gomes de Sousa

ST-08

Insight from a 3-D model of Dsv enzyme complex for sulfite-binding pockets competition

Ciáceres Carvalho

ST-10

NEQUIM Contact System - Protein-Ligand and Protein-Protein Contact Fingerprint Generation and Comparison

Andrelly Martins José

ST-12

Molecular Dynamics Simulation of protein Rubredoxin, potential thermostable

Thaís Rego

ST-14

Database of High Quality Ligand-Protein Datasets for Validation of Docking/Scoring Studies

Henrique Elias

ST-16

Simulating the Population Dynamics of Epithelial Cells in vitro

Beatriz Stransky

ST-18

Molecular Dynamics Simulations of Calmodulin: A Comparative Study of Reaction Field and Particle-Mesh Ewald Eletrostatic Treatments

Priscila Capriles

ST-20

Classification oracle based on protein secondary structure using Singular Value Decomposition

Oto Coelho Junior

ST-22

A relational database of structurally variant drug targets

Sérgio Amorim de Alencar

ST-24

Identification of phylogenetic relationship between GDPD and SMaseD proteins based on active site amino acid physical chemical properties.

Izabella Pena

ST-26

Predicting the position of hydrogen atoms in proteins through the pattern recognition of hydrogen bonds

Adauto Mancini

ST-28

Computational analysis suggests that virulence of Chromobacterium violaceum might be linked to biofilm formation and poly-NAG biosynthesis.

Sidnei Becker

ST-30

Co-evolution of residues in the hexokinase family as measured by statistical coupling analysis

Lucas Bleicher

ST-32

Identification of Biological and Physico-Chemical Parameters for Bioinformatic tool of Reprolysin Subfamily of Zinc Metalloproteinases

Ricardo Andrez

ST-34

The Table of Interface Forming Residues as the Specificity Indicator for Serine Proteases Bound to Different Inhibitors Indicator for Serine Proteases Bound to Different Inhibitors

Cristina Ribeiro

ST-36

Comparative study by the MC simulation for the structure of crotamine homologous sequence structure of the Crotalus durissus

Fabiana Almeida

ST-38

3D Structure of Chitinase of M. perniciosa by Comparative Modeling

Rafaela Galante

ST-40

Study of thyroid hormone receptor and its mutations

Paulo Cesar Telles de Souza

ST-42 Mapping Epitopes of Protein Sequences Using Mimotopes José Geraldo Pereira

 FUNCTIONAL GENOMICS 

FG-02

Identification of breast cancer alternatively spliced transcripts through alternative splicing enriched cDNA libraries

Elisa Ferreira

FG-04

Use of MESs clustering to compare tissues by gene expression

Saulo Pinto

FG-06

In silico prospection for new targets in human angiogenesis: searching VEGF and angiostatin homologues

Aline Martins

FG-08

Clustering samples of gene expression data by means of logical expressions evolved by genetic programming

Ismael Santana

FG-10

High throughput analysis of Trypanosoma cruzi transcriptome: mRNA structure and degradation profile obtained by microarrays and pyrosequencing

Christian Probst

FG-12

Significance tests for the differential analysis of any digital gene expression profiles

Leonardo Varuzza

FG-14

A graph-theory based computer aplication which combines  transcription factor binding sites with putative promoter regions in yeasts

Otávio Brustolini

 SYSTEMS BIOLOGY 

SY-02

A three-dimensional multi-agent based model for the development of chronic chagasic cardiomyopathy

Viviane Galvão

SY-04

A systemic approach of complex dynamics of dengue epidemics through cellular automata modelling: comparison with actual epidemics time series and time-spatial patterns

Leonardo Santos

SY-06

In silico modeling of biohydrogen production.

Itamar de Oliveira

SY-08

Serial Analysis of Gene Expression on prostate cancer pathway

Melinne Noronha

 DATABASES 

DB-02

Integration and use of Schistosoma mansoni genomic data for the discovery of candidate therapeutic targets

Adhemar Zerlotini

DB-04

SIGLa - A Dynamic System to Integrate Laboratory Data Based on Workflow Definition

Herbert Fernandes

DB-06

Computational Simulation of the Dengue Epidemy at Rio de Janeiro in 2008

Ane Kelly Geraldo

DB-07

Artificial Intelligence applied in the selection of medicinal plants of cerrado with antimicrobial activity

Saulo Amui

DB-08

A simple algorithm to remove redundancy from protein databank.

Bráulio Couto

DB-10

FUTDB - FUned Toxin Data Base: a database to store data for experiments of protein and toxin purification.

Ricardo Ribeiro

DB-12

BioXdb: a cross-reference database

Flávio Engelke

DB-14

Database of High Quality Ligand-Protein Datasets for Validation of Docking/Scoring Studies

Henrique Elias

DB-18

Metagenomic data survey using PSSM and MetaGene algorithm

Rafael Guedes

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